miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166069707|gb|FD523907.1|FD523907 CTTTTTTTAGCATAACGAGTTCATATTTTCCAAACACCGAAAACAAGTCCCTCACTACCAAAATTGCATAGCTTTAGTGT
AGAGGGTCAGCACGCGCAATCTCTACACCAAGCTATGGTATGAGCAAAAATAATACTCCCTCCGTCCCAAAATAATTGTC
TTAGGTTTAGTACAATTTTATAATAGAGCTAGTACAAGGTTGAGACATTTATTTTGAAACAGAGGAAGTAGAAACAAGAC
TACAGTATGGTCCTTGTAAGCACGGCGATGGATCAGTTGGCCGAATATTTCTTTGACAGCGCGTCGAAGTGTTTCCTTTG
CTGTTCTGATACTGAGGGCTTTACTTTAGATAGCGCATGCTCAAAGTGCTGCAGTTTTATCTTATTAGTCAAGTCAGTAC
TCATTGACGAGTCACCTTTCGCCAGGAATTCGCACCTCTCTTCCAACGCTGCCATGGCTGCTTCGTTCACCAGTGATGCC
AGGTCGGCACCAGTGAGATTATTGCACTCCTCTCGACGTGCAATTGTTTCCAAATCAACATCTTCCGAGAGAGTTTTCTT
TTCAGTATGTGCTTTCAATATCGCAACCCGCTCATCAGCACCAGGTAAAGGTACAAAATGTTTCTTCCCAAATCTACCAG
GCCGTAGAACAGCCTCATCTATAACATCAATTCTGTTCGTAGCTCCAAT




Most similar to sp|Q9SS94|CD48C_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C
            OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2
          Length = 820

 Score =  128 bits (321), Expect = 4e-29
 Identities = 74/137 (54%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
 Frame = -1

Query: 689  IGATNRIDVIDEAVLRPGRFGKKHFVPLPGADERVAILKAHTEKKTLSEDVDLETIARRE 510
            IGATNR DV+D A LRPGRFG   +VPLP ADER +ILKA   KK +   VDL+ IA + 
Sbjct: 667  IGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIA-KN 725

Query: 509  ECNNLTGADLASLVNEAAMAALEERCEFLAKGDSSMS--TDLTN-KIKLQHFEHALSKVK 339
             C   +GADLA LV +A   A+E   E +   +SS    TD+T   IK +HFE ALS V 
Sbjct: 726  NCEGFSGADLAHLVQKATFQAVE---EMIGSSESSEDDVTDITQCTIKTRHFEQALSLVS 782

Query: 338  PSVSEQQRKHFDALSKK 288
            PSV++QQR+H+DALS K
Sbjct: 783  PSVNKQQRRHYDALSTK 799